Phenotypic and Genomic Local Adaptation across Latitude and Altitude in Populus trichocarpa.
Identifieur interne : 000788 ( Main/Exploration ); précédent : 000787; suivant : 000789Phenotypic and Genomic Local Adaptation across Latitude and Altitude in Populus trichocarpa.
Auteurs : Man Zhang [États-Unis, République populaire de Chine] ; Haktan Suren [États-Unis] ; Jason A. Holliday [États-Unis]Source :
- Genome biology and evolution [ 1759-6653 ] ; 2019.
Descripteurs français
- KwdFr :
- Adaptation physiologique (MeSH), Altitude (MeSH), Exome (MeSH), Génome végétal (MeSH), Génomique (MeSH), Génétique des populations (MeSH), Phylogéographie (MeSH), Phénotype (MeSH), Polymorphisme de nucléotide simple (MeSH), Populus (génétique), Protéines végétales (génétique), Régulation de l'expression des gènes végétaux (MeSH), Transcriptome (MeSH).
- MESH :
English descriptors
- KwdEn :
- Adaptation, Physiological (MeSH), Altitude (MeSH), Exome (MeSH), Gene Expression Regulation, Plant (MeSH), Genetics, Population (MeSH), Genome, Plant (MeSH), Genomics (MeSH), Phenotype (MeSH), Phylogeography (MeSH), Plant Proteins (genetics), Polymorphism, Single Nucleotide (MeSH), Populus (genetics), Transcriptome (MeSH).
- MESH :
- chemical , genetics : Plant Proteins.
- genetics : Populus.
- Adaptation, Physiological, Altitude, Exome, Gene Expression Regulation, Plant, Genetics, Population, Genome, Plant, Genomics, Phenotype, Phylogeography, Polymorphism, Single Nucleotide, Transcriptome.
Abstract
Local adaptation to climate allows plants to cope with temporally and spatially heterogeneous environments, and parallel phenotypic clines provide a natural experiment to uncover the genomic architecture of adaptation. Though extensive effort has been made to investigate the genomic basis of local adaptation to climate across the latitudinal range of tree species, less is known for altitudinal clines. We used exome capture to genotype 451 Populus trichocarpa genotypes across altitudinal and latitudinal gradients spanning the natural species range, and phenotyped these trees for a variety of adaptive traits in two common gardens. We observed clinal variation in phenotypic traits across the two transects, which indicates climate-driven selection, and coupled gene-based genotype-phenotype and genotype-environment association scans to identify imprints of climatic adaptation on the genome. Although many of the phenotype- and climate-associated genes were unique to one transect, we found evidence of parallelism between latitude and altitude, as well as significant convergence when we compared our outlier genes with those putatively involved in climatic adaptation in two gymnosperm species. These results suggest that not only genomic constraint during adaptation to similar environmental gradients in poplar but also different environmental contexts, spatial scale, and perhaps redundant function among potentially adaptive genes and polymorphisms lead to divergent adaptive architectures.
DOI: 10.1093/gbe/evz151
PubMed: 31298685
PubMed Central: PMC6735766
Affiliations:
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Though extensive effort has been made to investigate the genomic basis of local adaptation to climate across the latitudinal range of tree species, less is known for altitudinal clines. We used exome capture to genotype 451 Populus trichocarpa genotypes across altitudinal and latitudinal gradients spanning the natural species range, and phenotyped these trees for a variety of adaptive traits in two common gardens. We observed clinal variation in phenotypic traits across the two transects, which indicates climate-driven selection, and coupled gene-based genotype-phenotype and genotype-environment association scans to identify imprints of climatic adaptation on the genome. Although many of the phenotype- and climate-associated genes were unique to one transect, we found evidence of parallelism between latitude and altitude, as well as significant convergence when we compared our outlier genes with those putatively involved in climatic adaptation in two gymnosperm species. These results suggest that not only genomic constraint during adaptation to similar environmental gradients in poplar but also different environmental contexts, spatial scale, and perhaps redundant function among potentially adaptive genes and polymorphisms lead to divergent adaptive architectures.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31298685</PMID><DateCompleted><Year>2020</Year><Month>03</Month><Day>02</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>09</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1759-6653</ISSN><JournalIssue CitedMedium="Internet"><Volume>11</Volume><Issue>8</Issue><PubDate><Year>2019</Year><Month>08</Month><Day>01</Day></PubDate></JournalIssue><Title>Genome biology and evolution</Title><ISOAbbreviation>Genome Biol Evol</ISOAbbreviation></Journal><ArticleTitle>Phenotypic and Genomic Local Adaptation across Latitude and Altitude in Populus trichocarpa.</ArticleTitle><Pagination><MedlinePgn>2256-2272</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1093/gbe/evz151</ELocationID><Abstract><AbstractText>Local adaptation to climate allows plants to cope with temporally and spatially heterogeneous environments, and parallel phenotypic clines provide a natural experiment to uncover the genomic architecture of adaptation. Though extensive effort has been made to investigate the genomic basis of local adaptation to climate across the latitudinal range of tree species, less is known for altitudinal clines. We used exome capture to genotype 451 Populus trichocarpa genotypes across altitudinal and latitudinal gradients spanning the natural species range, and phenotyped these trees for a variety of adaptive traits in two common gardens. We observed clinal variation in phenotypic traits across the two transects, which indicates climate-driven selection, and coupled gene-based genotype-phenotype and genotype-environment association scans to identify imprints of climatic adaptation on the genome. Although many of the phenotype- and climate-associated genes were unique to one transect, we found evidence of parallelism between latitude and altitude, as well as significant convergence when we compared our outlier genes with those putatively involved in climatic adaptation in two gymnosperm species. These results suggest that not only genomic constraint during adaptation to similar environmental gradients in poplar but also different environmental contexts, spatial scale, and perhaps redundant function among potentially adaptive genes and polymorphisms lead to divergent adaptive architectures.</AbstractText><CopyrightInformation>© The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Man</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, Virginia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>National Engineering Research Center for Floriculture, School of Landscape Architecture, Beijing Forestry University, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Suren</LastName><ForeName>Haktan</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, Virginia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Holliday</LastName><ForeName>Jason 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Holliday</name><name sortKey="Suren, Haktan" sort="Suren, Haktan" uniqKey="Suren H" first="Haktan" last="Suren">Haktan Suren</name></country><country name="République populaire de Chine"><noRegion><name sortKey="Zhang, Man" sort="Zhang, Man" uniqKey="Zhang M" first="Man" last="Zhang">Man Zhang</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:31298685" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |